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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27800181_27801671_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27800181 - 27801671
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCATTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTCTTCATT
Flanking Amino Acid:
ASVETVVGYSWLPILLNDRL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.4
0.73
0.9
80.4
36.9
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
65.6
0.57
1.7
84.73
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013317
27797609 - 27844887
47279