About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27801774_27802544_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27801774 - 27802544
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAAAG
5'SS Class:
major
3'SS Sequence:
TTTTCTATCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATTCCCGTATTT
Flanking Amino Acid:
PFHYSIHSPEKVPSQTPPIK
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.6
40.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.7
0.8
0.7
81.6
28.7
Minor 5ss
38.4
-1.3
2.9
48.5
47.2
Minor BPS
49.8
0.07
2.2
75.74
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013317
27797609 - 27844887
47279