Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27805043_27806769_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27805043 - 27806769

Intron Length:

1727

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATATTG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCTGAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAA

U12 Branch Point Sequence:

TTATTTCAAACA

Flanking Amino Acid:

PDPQREVAKPGAGGSAVLSE

Intron Amino Acid Position:

301

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

74.4

36.8

Major BPS

0.79

0.8

83.7

25.7

Major PPT

65.3

0.35

61.6

33.5

Minor 5ss

41.6

-0.9

3.1

56.3

47.9

Minor BPS

49.8

-0

1.9

68.11

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012724

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023740

27800660 - 27817917

17258

ENSAPLT00000013317

27797609 - 27844887

47279