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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27818947_27820639_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27818947 - 27820639
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
GTTTCAAATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AATGTTTCAAAT
Flanking Amino Acid:
DSLPQLHDFTISDARSGKGR
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
66.2
38
Major BPS
77.3
0.68
1
81.5
27
Major PPT
65.9
0.36
1
57.1
42.6
Minor 5ss
34.9
-1.7
3.1
44.6
36.5
Minor BPS
48.3
-0
1.7
64.57
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013317
27797609 - 27844887
47279