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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27821924_27822679_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27821924 - 27822679
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
ATTGCTTTGACT
Flanking Amino Acid:
FICVSCFEYKGKQSSDKVST
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
80.9
0.69
0.8
74.3
34.8
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
72.9
0.8
1.3
85.05
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013317
27797609 - 27844887
47279