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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27839832_27840891_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27839832 - 27840891
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTACTGTAATG
Flanking Amino Acid:
VDKSKLDPNKAYIQITFVEP
Intron Amino Acid Position:
1295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
100
1.24
0.5
100
0
Major PPT
81.8
0.71
0.7
79.8
25.6
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
47.8
-0.3
2.1
54.95
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013317
27797609 - 27844887
47279