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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27843118_27844007_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27843118 - 27844007
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATC
Flanking Amino Acid:
LRLCFKEFIMRCGEAVDKNK
Intron Amino Acid Position:
1457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.3
0.59
0.8
69.9
35.7
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
63
0.39
1.7
75.34
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012724
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013317
27797609 - 27844887
47279