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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27934638_27957736_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27934638 - 27957736
Intron Length:
23099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTCTTTTCCACG
Flanking Amino Acid:
YPANTNGSAAEKEEVAINGE
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
91.2
0.93
0.6
84.1
30.8
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
47.6
-0.3
2
58.3
44.1

Associated Gene:

Gene:
KANK1
Ensembl Gene ID:
ENSAPLG00000020411
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038603
27858929 - 27983188
124260
ENSAPLT00000036313
27880770 - 27984683
103914
ENSAPLT00000032107
27886412 - 27984683
98272