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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27960392_27970821_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27960392 - 27970821
Intron Length:
10430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTCTTTCAACA
Flanking Amino Acid:
KQCAERNTASVCSNNENTLK
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
68.9
43.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
77.6
0.62
0.9
73.6
35.7
Minor 5ss
37.2
-1.4
3
48
47.5
Minor BPS
59.4
0.29
1.5
69.57
36.4

Associated Gene:

Gene:
KANK1
Ensembl Gene ID:
ENSAPLG00000020411
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025078
27957737 - 27984683
26947