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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27970261_27970821_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27970261 - 27970821
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAACT
5'SS Class:
major
3'SS Sequence:
TGTCTTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTCTTTCAACA
Flanking Amino Acid:
TDDQLASGLYVCSNNENTLK
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
72.7
36.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
77.6
0.62
0.9
73.6
35.7
Minor 5ss
36.3
-1.5
3
48.1
41.5
Minor BPS
59.4
0.29
1.5
69.57
36.4

Associated Gene:

Gene:
KANK1
Ensembl Gene ID:
ENSAPLG00000020411
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038603
27858929 - 27983188
124260
ENSAPLT00000036313
27880770 - 27984683
103914
ENSAPLT00000032107
27886412 - 27984683
98272