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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27970931_27972542_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27970931 - 27972542
Intron Length:
1612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGGC
5'SS Class:
major
3'SS Sequence:
TCCTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TCCAACTGAACC
Flanking Amino Acid:
KNLQFVGINGGYETTSSDDS
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.2
40.9
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
78.1
0.63
0.7
72.3
26
Minor 5ss
30.3
-2.3
3.3
33.5
42
Minor BPS
51.3
0.02
1.7
61.1
43.7

Associated Gene:

Gene:
KANK1
Ensembl Gene ID:
ENSAPLG00000020411
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038603
27858929 - 27983188
124260
ENSAPLT00000036313
27880770 - 27984683
103914
ENSAPLT00000032107
27886412 - 27984683
98272
ENSAPLT00000025078
27957737 - 27984683
26947