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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27972756_27974009_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27972756 - 27974009
Intron Length:
1254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTGG
5'SS Class:
major
3'SS Sequence:
CTGTCTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AAGATTTGAATA
Flanking Amino Acid:
CEAEEVEIRERYELSEKMLS
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61.3
45.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
78.6
0.64
0.8
76.8
31.9
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
48.1
-0.1
1.3
51.96
33.5

Associated Gene:

Gene:
KANK1
Ensembl Gene ID:
ENSAPLG00000020411
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036313
27880770 - 27984683
103914
ENSAPLT00000032107
27886412 - 27984683
98272
ENSAPLT00000025078
27957737 - 27984683
26947
ENSAPLT00000038603
27858929 - 27983188
124260