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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27979686_27980228_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27979686 - 27980228
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCCAA
5'SS Class:
major
3'SS Sequence:
TCTTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GGTTATTTATTT
Flanking Amino Acid:
CGDVNAKASQAGQTALMLAV
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
65
42.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.8
83.9
31
Minor 5ss
32.6
-2
2.9
38.9
46.2
Minor BPS
52.6
0.16
1.8
70.37
40.7

Associated Gene:

Gene:
KANK1
Ensembl Gene ID:
ENSAPLG00000020411
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036313
27880770 - 27984683
103914
ENSAPLT00000032107
27886412 - 27984683
98272
ENSAPLT00000025078
27957737 - 27984683
26947
ENSAPLT00000038603
27858929 - 27983188
124260