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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_27997837_27998585_R

Intron Information:

Intron Rank:
144147
Intron Class:
major
Intron Phase:
Intron Coordinates:
27997837 - 27998585
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTTTCTGTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.2
35.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.4
0.8
0.8
80.9
30.1
Minor 5ss
29.7
-2.3
3.5
37.5
41.8
Minor BPS
60.8
0.42
1.8
80.3
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024813
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043464
27997772 - 28000242
2471