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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28205393_28205668_F

Intron Information:

Intron Rank:
151330
Intron Class:
major
Intron Phase:
Intron Coordinates:
28205393 - 28205668
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
CAATACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ACTTTCTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.1
0.54
0.9
69.8
40.7
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
63.4
0.42
1.5
69.35
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031237
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027284
28200109 - 28205696
5588