About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28221158_28222406_F

Intron Information:

Intron Rank:
145505
Intron Class:
major
Intron Phase:
Intron Coordinates:
28221158 - 28222406
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ACTTCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
79.5
0.66
1
76.8
37
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
63.1
0.49
1.7
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028452
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029416
28221054 - 28222916
1863