About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28237579_28237833_F

Intron Information:

Intron Rank:
131315
Intron Class:
major
Intron Phase:
Intron Coordinates:
28237579 - 28237833
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATAT
5'SS Class:
major
3'SS Sequence:
TATTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCATTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
70.7
35.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
84.8
0.78
0.8
81.8
35.3
Minor 5ss
38.6
-1.3
3.3
56.3
47.8
Minor BPS
58
0.33
1.6
71.31
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020540
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028800
28237380 - 28238932
1553