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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28332192_28333000_F

Intron Information:

Intron Rank:
127516
Intron Class:
major
Intron Phase:
Intron Coordinates:
28332192 - 28333000
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
ATTTCCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
77.4
0.62
0.9
69
41.8
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
95.5
1.51
0.6
102.8
20

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018778
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038243
28332105 - 28334025
1921