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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28400669_28407911_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

28400669 - 28407911

Intron Length:

7243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGTTCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTAAT

U12 Branch Point Sequence:

TCACATAGAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.1

0.99

0.7

83.1

30.9

Major BPS

73.1

0.57

71.9

31.3

Major PPT

78.4

0.64

0.8

77.1

37.1

Minor 5ss

29.6

-2.3

2.6

32.5

42.4

Minor BPS

42.8

-0.4

1.7

57.27

39.1

Associated Gene:

Gene:

SMARCA2

Ensembl Gene ID:

ENSAPLG00000013873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014555

28400474 - 28557930

157457

ENSAPLT00000047703

28400474 - 28567886

167413

ENSAPLT00000033799

28400474 - 28556203

155730

ENSAPLT00000029625

28400474 - 28518663

118190