Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28408173_28416098_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28408173 - 28416098

Intron Length:

7926

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATAGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTCCACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTTTTCTCCACA

Flanking Amino Acid:

PQEGMHQMHKSIDGLHEKGM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

80.9

31.4

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

88.6

0.87

0.6

84.4

23.7

Minor 5ss

36.4

-1.5

3.6

56.3

47.9

Minor BPS

61.2

0.35

79.1

37.4

Associated Gene:

Gene:

SMARCA2

Ensembl Gene ID:

ENSAPLG00000013873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047703

28400474 - 28567886

167413

ENSAPLT00000033799

28400474 - 28556203

155730

ENSAPLT00000029625

28400474 - 28518663

118190

ENSAPLT00000014555

28400474 - 28557930

157457

ENSAPLT00000048168

28395381 - 28518663

123283