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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28424404_28427833_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28424404 - 28427833

Intron Length:

3430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGAGG

5'SS Class:

major

3'SS Sequence:

TTTTATGATTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTATGATT

Flanking Amino Acid:

AAITPKTWSEGQTPDMSVST

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

57.6

46.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

79.8

0.67

77.9

40.2

Minor 5ss

29.6

-2.3

3.4

39.2

46.3

Minor BPS

62.2

0.47

1.5

82.94

31.9

Associated Gene:

Gene:

SMARCA2

Ensembl Gene ID:

ENSAPLG00000013873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047703

28400474 - 28567886

167413

ENSAPLT00000033799

28400474 - 28556203

155730

ENSAPLT00000029625

28400474 - 28518663

118190

ENSAPLT00000014555

28400474 - 28557930

157457

ENSAPLT00000048168

28395381 - 28518663

123283