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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28435040_28439605_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28435040 - 28439605
Intron Length:
4566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATATTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATAT
Flanking Amino Acid:
IEKERMRRLMAEDEEGYRKL
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.6
0.58
0.9
75.6
38.3
Minor 5ss
34.1
-1.8
3.3
45.5
44.6
Minor BPS
56.4
0.28
1.7
77.34
39.2

Associated Gene:

Gene:
SMARCA2
Ensembl Gene ID:
ENSAPLG00000013873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033799
28400474 - 28556203
155730
ENSAPLT00000029625
28400474 - 28518663
118190
ENSAPLT00000014555
28400474 - 28557930
157457
ENSAPLT00000048168
28395381 - 28518663
123283
ENSAPLT00000047703
28400474 - 28567886
167413