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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28445650_28445852_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28445650 - 28445852
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATCTGTAATC
Flanking Amino Acid:
QLDAWLEMNPGYEVAPRSDS
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79
0.65
0.9
72.3
37.9
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
61.8
0.35
2
74.68
36.5

Associated Gene:

Gene:
SMARCA2
Ensembl Gene ID:
ENSAPLG00000013873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047703
28400474 - 28567886
167413
ENSAPLT00000033799
28400474 - 28556203
155730
ENSAPLT00000029625
28400474 - 28518663
118190
ENSAPLT00000014555
28400474 - 28557930
157457
ENSAPLT00000048168
28395381 - 28518663
123283