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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28445914_28448730_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28445914 - 28448730

Intron Length:

2817

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTGTC

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTGCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ACCTTTTTATTT

Flanking Amino Acid:

DESGSEYEEEDDEEESSRLE

Intron Amino Acid Position:

642

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.8

81.4

30.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

71.1

0.48

0.9

65.8

Minor 5ss

43.3

-0.7

3.1

60.6

44.5

Minor BPS

52.9

0.17

1.5

64.63

41.3

Associated Gene:

Gene:

SMARCA2

Ensembl Gene ID:

ENSAPLG00000013873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014555

28400474 - 28557930

157457

ENSAPLT00000048168

28395381 - 28518663

123283

ENSAPLT00000047703

28400474 - 28567886

167413

ENSAPLT00000033799

28400474 - 28556203

155730

ENSAPLT00000029625

28400474 - 28518663

118190