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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28448832_28449175_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28448832 - 28449175
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
GTCTGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTACTTTAGCT
Flanking Amino Acid:
VSEKDAKQIIETAKQDVDDE
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
75
35.2
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
78.5
0.64
0.9
69
41.9
Minor 5ss
34.4
-1.8
3.4
45.6
43.6
Minor BPS
72
0.77
1.5
88.8
36

Associated Gene:

Gene:
SMARCA2
Ensembl Gene ID:
ENSAPLG00000013873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033799
28400474 - 28556203
155730
ENSAPLT00000029625
28400474 - 28518663
118190
ENSAPLT00000014555
28400474 - 28557930
157457
ENSAPLT00000048168
28395381 - 28518663
123283
ENSAPLT00000047703
28400474 - 28567886
167413