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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28456789_28457089_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

28456789 - 28457089

Intron Length:

301

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTACTGTGG

5'SS Class:

weak_major

3'SS Sequence:

TAAACTTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

CTTTTATAAACT

Flanking Amino Acid:

NAPFAMTGERVDLNEEETIL

Intron Amino Acid Position:

920

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.1

0.19

1.2

45.2

45.1

Major BPS

78.6

0.71

78.6

Major PPT

0.43

0.9

38.9

Minor 5ss

34.7

-1.7

3.4

38.4

46.6

Minor BPS

58.7

0.35

80.31

41.8

Associated Gene:

Gene:

SMARCA2

Ensembl Gene ID:

ENSAPLG00000013873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047703

28400474 - 28567886

167413

ENSAPLT00000033799

28400474 - 28556203

155730

ENSAPLT00000029625

28400474 - 28518663

118190

ENSAPLT00000014555

28400474 - 28557930

157457

ENSAPLT00000048168

28395381 - 28518663

123283