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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28457204_28459157_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28457204 - 28459157
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTACACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTTCTGTACT
Flanking Amino Acid:
KEVESQLPEKVEYVIKCDMS
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.2
71.7
39.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.2
0.61
0.9
72.5
37.6
Minor 5ss
43.5
-0.7
2.6
57.7
46.7
Minor BPS
61.7
0.45
1.8
81.77
39.5

Associated Gene:

Gene:
SMARCA2
Ensembl Gene ID:
ENSAPLG00000013873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047703
28400474 - 28567886
167413
ENSAPLT00000033799
28400474 - 28556203
155730
ENSAPLT00000029625
28400474 - 28518663
118190
ENSAPLT00000014555
28400474 - 28557930
157457
ENSAPLT00000048168
28395381 - 28518663
123283