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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28466243_28469265_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28466243 - 28469265
Intron Length:
3023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTGTTTTTACTT
Flanking Amino Acid:
FRNFLYLRLDGTTKSEDRAA
Intron Amino Acid Position:
1094

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.7
0.83
0.7
84.6
29.8
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
57.5
0.31
1.6
71.32
40.7

Associated Gene:

Gene:
SMARCA2
Ensembl Gene ID:
ENSAPLG00000013873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014555
28400474 - 28557930
157457
ENSAPLT00000048168
28395381 - 28518663
123283
ENSAPLT00000047703
28400474 - 28567886
167413
ENSAPLT00000033799
28400474 - 28556203
155730
ENSAPLT00000029625
28400474 - 28518663
118190