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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28479714_28483553_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28479714 - 28483553
Intron Length:
3840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ACTGCCATTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CCTTTCCCAACT
Flanking Amino Acid:
RREEEFDLFMRMDMDRRRED
Intron Amino Acid Position:
1251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
66.6
0.37
0.9
58.8
36.4
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
51.9
0.14
1.9
72.26
44.7

Associated Gene:

Gene:
SMARCA2
Ensembl Gene ID:
ENSAPLG00000013873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047703
28400474 - 28567886
167413
ENSAPLT00000033799
28400474 - 28556203
155730
ENSAPLT00000029625
28400474 - 28518663
118190
ENSAPLT00000014555
28400474 - 28557930
157457
ENSAPLT00000048168
28395381 - 28518663
123283