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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28498129_28510991_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28498129 - 28510991
Intron Length:
12863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATTTTCTCAACA
Flanking Amino Acid:
IIDTVINYKDSSGRQLSEVF
Intron Amino Acid Position:
1396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
78.9
0.65
0.9
74.7
34.3
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
73.7
0.74
1.4
81.94
32.6

Associated Gene:

Gene:
SMARCA2
Ensembl Gene ID:
ENSAPLG00000013873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047703
28400474 - 28567886
167413
ENSAPLT00000033799
28400474 - 28556203
155730
ENSAPLT00000029625
28400474 - 28518663
118190
ENSAPLT00000014555
28400474 - 28557930
157457
ENSAPLT00000048168
28395381 - 28518663
123283