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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28511098_28511880_F

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

28511098 - 28511880

Intron Length:

783

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAACA

5'SS Class:

strong_major

3'SS Sequence:

ACAAATGAAACAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TCCTCAA

U12 Branch Point Sequence:

TTTTCCTCAACA

Flanking Amino Acid:

RKPVDFKKIKERIRNHKYRS

Intron Amino Acid Position:

1432

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

74.4

Major BPS

73.1

0.58

73.8

32.3

Major PPT

-0

1.1

40.1

41.9

Minor 5ss

32.4

-2

3.1

40.9

45.1

Minor BPS

83.9

1.06

1.3

92.11

Associated Gene:

Gene:

SMARCA2

Ensembl Gene ID:

ENSAPLG00000013873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047703

28400474 - 28567886

167413

ENSAPLT00000033799

28400474 - 28556203

155730

ENSAPLT00000029625

28400474 - 28518663

118190

ENSAPLT00000014555

28400474 - 28557930

157457

ENSAPLT00000048168

28395381 - 28518663

123283