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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28515440_28516971_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28515440 - 28516971
Intron Length:
1532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTACTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
DDEEDESESESKSVKVKIKL
Intron Amino Acid Position:
1510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.9
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.6
0.8
0.8
81.1
30.6
Minor 5ss
32.5
-2
2.9
41.7
37.6
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
SMARCA2
Ensembl Gene ID:
ENSAPLG00000013873
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033799
28400474 - 28556203
155730
ENSAPLT00000029625
28400474 - 28518663
118190
ENSAPLT00000014555
28400474 - 28557930
157457
ENSAPLT00000048168
28395381 - 28518663
123283
ENSAPLT00000047703
28400474 - 28567886
167413