Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28517115_28557838_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28517115 - 28557838

Intron Length:

40724

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GGGTCTCTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGCAAT

U12 Branch Point Sequence:

TTGCAATGAGTC

Flanking Amino Acid:

DDSDEDQDENFS*

Intron Amino Acid Position:

1558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

89.9

23.2

Major BPS

61.8

0.29

1.4

70.7

42.6

Major PPT

73.1

0.52

65.7

40.9

Minor 5ss

48.6

-0.1

2.8

71.8

38.1

Minor BPS

40.7

-0.7

1.9

51.39

39.1

Associated Gene:

Gene:

SMARCA2

Ensembl Gene ID:

ENSAPLG00000013873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014555

28400474 - 28557930

157457