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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28651572_28652982_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28651572 - 28652982
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATATTTTTCACT
Flanking Amino Acid:
CDSGEDEENCGNVTCSAAEF
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.2
35.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.4
0.57
0.9
66.1
39.6
Minor 5ss
29.7
-2.3
3.5
37.5
41.8
Minor BPS
61.5
0.44
1.7
78.4
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038714
28650458 - 28660482
10025
ENSAPLT00000020545
28646025 - 28659844
13820
ENSAPLT00000020288
28650458 - 28658985
8528
ENSAPLT00000016235
28649188 - 28659844
10657