About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28653781_28654226_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28653781 - 28654226
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
ACTTCTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
CATCTAAGAATT
Flanking Amino Acid:
DWSDEPLKECNINECLVNNG
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
66.4
0.41
1
61.3
37
Major PPT
78.3
0.64
0.8
70.2
35.8
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
42
-0.5
1.8
57.61
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020545
28646025 - 28659844
13820
ENSAPLT00000020288
28650458 - 28658985
8528
ENSAPLT00000016235
28649188 - 28659844
10657
ENSAPLT00000038714
28650458 - 28660482
10025