About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28654347_28654422_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28654347 - 28654422
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATTGTCTTCACA
Flanking Amino Acid:
FELVDKRTCGDIDECQNPGI
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.8
1.18
0.7
98.3
5.31
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
79
0.65
0.9
72.8
36.9
Minor 5ss
30
-2.3
3.8
44.9
43.2
Minor BPS
59.8
0.3
1.9
72.86
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038714
28650458 - 28660482
10025
ENSAPLT00000020545
28646025 - 28659844
13820
ENSAPLT00000020288
28650458 - 28658985
8528
ENSAPLT00000016235
28649188 - 28659844
10657