Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28655953_28656324_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28655953 - 28656324

Intron Length:

372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCTCCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAA

U12 Branch Point Sequence:

TAGCCAGTAAAC

Flanking Amino Acid:

EIQWPNGIALDLVKSRLYWL

Intron Amino Acid Position:

595

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

76.7

34.9

Major BPS

55.1

0.13

1.2

57.3

36.3

Major PPT

84.1

0.77

0.7

77.9

30.9

Minor 5ss

45.7

-0.5

2.5

58.5

Minor BPS

43.8

-0.4

2.2

55.89

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015474

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038714

28650458 - 28660482

10025

ENSAPLT00000020545

28646025 - 28659844

13820

ENSAPLT00000020288

28650458 - 28658985

8528

ENSAPLT00000016235

28649188 - 28659844

10657