About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28656722_28657030_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28656722 - 28657030
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTATG
5'SS Class:
major
3'SS Sequence:
TTTGTGCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AATTGCTTAAAA
Flanking Amino Acid:
IIYHELVQPSGKNWCEENMA
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.7
44.5
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
72.2
0.5
1
66.7
39.5
Minor 5ss
43.5
-0.7
3
59.2
45.4
Minor BPS
62.6
0.39
1.9
72.63
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016235
28649188 - 28659844
10657
ENSAPLT00000038714
28650458 - 28660482
10025
ENSAPLT00000020545
28646025 - 28659844
13820
ENSAPLT00000020288
28650458 - 28658985
8528