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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28658626_28658731_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28658626 - 28658731
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
CTCTCCTTAAAG
Flanking Amino Acid:
TSGAWAVLPILLLVMAVVAG
Intron Amino Acid Position:
794

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
74.5
0.55
1
74.6
28
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
69.9
0.48
1.5
68.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015474
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020545
28646025 - 28659844
13820
ENSAPLT00000020288
28650458 - 28658985
8528
ENSAPLT00000016235
28649188 - 28659844
10657
ENSAPLT00000038714
28650458 - 28660482
10025