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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28698260_28699746_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
28698260 - 28699746
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAGAA
5'SS Class:
major
3'SS Sequence:
TGATTTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCCCCCTTACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.4
32.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.8
0.6
0.9
72.6
37.5
Minor 5ss
35.2
-1.7
3.4
46.4
48.9
Minor BPS
55.9
0.27
2
78.96
42.6

Associated Gene:

Gene:
KCNV2
Ensembl Gene ID:
ENSAPLG00000018126
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017964
28698170 - 28705852
7683