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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28701526_28705576_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28701526 - 28705576
Intron Length:
4051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GATTTGCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GACTGCTGATTT
Flanking Amino Acid:
SIPHAWWWAAVSISTVGYGD
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
74.5
37.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
70
0.45
0.9
63.2
39.2
Minor 5ss
36.9
-1.5
2.7
46.9
41.8
Minor BPS
44.2
-0.3
2
58.59
44.5

Associated Gene:

Gene:
KCNV2
Ensembl Gene ID:
ENSAPLG00000018126
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017964
28698170 - 28705852
7683