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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28728002_28731702_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28728002 - 28731702
Intron Length:
3701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
TKLVKQLIISEINASLPSII
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
40.4
-1.1
2.9
61.4
42.9
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
PUM3
Ensembl Gene ID:
ENSAPLG00000002920
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003010
28719679 - 28745533
25855