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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28731784_28733608_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28731784 - 28733608
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTCTTGAAGC
Flanking Amino Acid:
MKTYIEKIATGEFSHLVLLA
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
32
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.9
0.72
0.8
76.1
32.5
Minor 5ss
29.4
-2.4
3.2
40.8
45.4
Minor BPS
60.5
0.31
1.8
71.92
39.2

Associated Gene:

Gene:
PUM3
Ensembl Gene ID:
ENSAPLG00000002920
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003010
28719679 - 28745533
25855