About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28736702_28737230_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28736702 - 28737230
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
MKQILTPMAQKEAVIKHSLV
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.1
34.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
69.5
0.44
1
62.7
36.5
Minor 5ss
34.3
-1.8
3.1
41.3
39
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
PUM3
Ensembl Gene ID:
ENSAPLG00000002920
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003010
28719679 - 28745533
25855