Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28739411_28740157_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

28739411 - 28740157

Intron Length:

747

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

CCCTGTGAAACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TTGGTATCAATC

Flanking Amino Acid:

RNIVKKFLMYGTKPQIAEII

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

77.8

38.7

Major BPS

89.7

0.98

0.7

89.9

Major PPT

58.7

0.2

1.1

53.4

39.6

Minor 5ss

33.5

-1.9

2.8

34.2

41.4

Minor BPS

47.1

-0.2

1.8

58.95

40.6

Associated Gene:

Gene:

PUM3

Ensembl Gene ID:

ENSAPLG00000002920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003010

28719679 - 28745533

25855