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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28741439_28742163_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28741439 - 28742163
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
GTTTCCTTAATT
Flanking Amino Acid:
KSKQIWESVRRKKCDKEKRE
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
78.4
0.64
0.8
73.2
31.7
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
90
1.33
0.8
96.98
27.6

Associated Gene:

Gene:
PUM3
Ensembl Gene ID:
ENSAPLG00000002920
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003010
28719679 - 28745533
25855