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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28834400_28837654_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28834400 - 28837654
Intron Length:
3255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
GETPIAVMGEFGDLNAVSPG
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.8
0.83
0.8
81.4
35.3
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
RFX3
Ensembl Gene ID:
ENSAPLG00000011096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011568
28833259 - 28893673
60415
ENSAPLT00000010315
28833259 - 28894070
60812
ENSAPLT00000039282
28833259 - 28894070
60812