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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28840097_28846313_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28840097 - 28846313
Intron Length:
6217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGCTATAACA
Flanking Amino Acid:
LNRVDFANVQEQASWVCQCD
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.3
0.57
1
70.7
38.7
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
66.7
0.52
1.7
80.03
36.1

Associated Gene:

Gene:
RFX3
Ensembl Gene ID:
ENSAPLG00000011096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039282
28833259 - 28894070
60812
ENSAPLT00000011568
28833259 - 28893673
60415
ENSAPLT00000010315
28833259 - 28894070
60812