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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28846464_28846782_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28846464 - 28846782
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGACAAA
5'SS Class:
major
3'SS Sequence:
GATTTTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CAATATTTAAAA
Flanking Amino Acid:
NIPQRMIQTKVAAVSAFAQT
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
67.5
39.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.4
0.62
0.8
72.7
37.3
Minor 5ss
36.7
-1.5
3.2
47.6
48.1
Minor BPS
52.9
0.09
1.6
59.79
39.5

Associated Gene:

Gene:
RFX3
Ensembl Gene ID:
ENSAPLG00000011096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011568
28833259 - 28893673
60415
ENSAPLT00000010315
28833259 - 28894070
60812
ENSAPLT00000039282
28833259 - 28894070
60812