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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_28849133_28849620_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28849133 - 28849620
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAGA
5'SS Class:
major
3'SS Sequence:
TTGTTCACTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
PPDGTTINEPSNLSEIESRL
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
71.7
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
79.7
0.67
0.9
71.2
39.6
Minor 5ss
28.3
-2.5
2.7
32.6
41.6
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
RFX3
Ensembl Gene ID:
ENSAPLG00000011096
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039282
28833259 - 28894070
60812
ENSAPLT00000011568
28833259 - 28893673
60415
ENSAPLT00000010315
28833259 - 28894070
60812